PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_953171851.2
Common NameNFYA-B1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 255aa    MW: 27696.9 Da    PI: 10.4265
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_953171851.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.6e-3398154158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF
  Traes_6BL_953171851.2  98 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 154
                            79****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-3796157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.72797157IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.2E-2999154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-22100122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-22131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLLPSSSSSS YDPKGDSFGK SVDDHMRSTL TFGDKHSVYA SQNTDYGHPM ACISYPFNDS  60
GSGVWAAYGS RAMFQPLMPG GGASATARVP LPVELAADEP IFVNPKQYNG ILRRRQLRAK  120
LEAQNKLTKN RKPYLHESRH LHAMKRARGS GGRFLNSKQL KQQQQQSGSA CTKAIADGAN  180
SLGSTHLRLG SGAAGDRTNS ASKAMSSQEN SKRVAAPAPA FTMIQAARKD DDFFHHHAHH  240
LSFSGHFGQS SDRYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2098159263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787470.0KM078747.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570525.11e-130PREDICTED: nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLW5GL750.0W5GL75_WHEAT; CCAAT-binding transcription factor B
STRINGMLOC_36554.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-36nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Qu B, et al.
    A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input.
    Plant Physiol., 2015. 167(2): p. 411-23
    [PMID:25489021]